PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s732061g003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family E2F/DP
Protein Properties Length: 353aa    MW: 39287.6 Da    PI: 10.0038
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s732061g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP73.13e-232085171
            E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                       rk+ksL+ll+++f++l+ + + + v l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++w+g
  PDK_30s732061g003 20 RKQKSLGLLCSNFVSLYDRDDVESVGLDDAARRL---GV--ERRRIYDIVNVLESVGVLARKAKNRYSWIG 85
                       79****************9999************...**..****************************98 PP

2E2F_TDP74.88.8e-24139223171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.........dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                        r+eksL+lltq+f+kl+ ++++++v+l+e+a+ L+ +         +   k+RR+YDi+NVL+++nliek     ++k+++rw g
  PDK_30s732061g003 139 RREKSLGLLTQNFVKLFLTTDADTVSLDEAARLLLGDghdssqmrnNNAAKVRRLYDIANVLSSMNLIEKtqqldTRKPAFRWLG 223
                        689***************************************999966689***********************99*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-261686IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.87E-161984IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-282085IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-202185IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-23136224IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.6E-30139223IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.15E-13141224IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.6E-19141223IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MASLPSPFLE SGCRHHTYSR KQKSLGLLCS NFVSLYDRDD VESVGLDDAA RRLGVERRRI  60
YDIVNVLESV GVLARKAKNR YSWIGFSGIP KALDDLKVLE DEEDHNGNFG DYKVSPAAVG  120
AAPSSCNLAC KARSVTDNRR EKSLGLLTQN FVKLFLTTDA DTVSLDEAAR LLLGDGHDSS  180
QMRNNNAAKV RRLYDIANVL SSMNLIEKTQ QLDTRKPAFR WLGTKGKPKA DNGVTVAVPQ  240
GTKQWNKRAF GNDITNVDLK RSKLNPPVDK KPSKACLRSD DLKECNLTAQ KQLQSSKGGY  300
VFGPFRPAGV TKRIGEVEEK GGNKVQDWES LASSFRPQYH NQVFRLHVLT LYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A6e-37192153228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798029.10.0PREDICTED: E2F transcription factor-like E2FE isoform X1
SwissprotQ8LSZ49e-98E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLM0TE121e-159M0TE12_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P02220_0011e-159(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.27e-93DP-E2F-like 1